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Protein / gene summary

Protein 554888 (297 aa) Sequence
Accession YP_003009404.1
Organism Paenibacillus sp. JDR-2
Replicon complete genome
Description transcriptional regulator, AraC family
Protein Refseq annotation
Note PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bha:BH3506 AraC/XylS family transcriptional regulator
Gene 576343 (894 bp) Sequence
Locus Pjdr2_0638
Location 741524..742417
Strand +
GC content 51.5%
Refseq cross-references (more)
NCBI Gene ID 8129685
GI 251794673
InterPro IPR010499
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Amino acid sequence

1

61

121

181

241

MSEGAGSILRMEHYTRIQYAITFIEEQLQEALSLEAIAIRAGFSLYHFQRLFHAITGFTV

QEYIRKRRLSRAAEELRVTRHTVLDISVSYQYGSQEAFTRAFAGYFGMAPAQYRKHQPLL

ALRLPIDLVALTANIRGGLTMYKPDIIERPATRIIGYNYPTNLNNERYFEEIPGFYAHFG

NHEYFMRIPNKARPAFAYGIPHGYGEDGAFSFLIGEEVTSFAEVEEGFACLELPSGKYAA

FRNGTMPEIGQNAWKYIYGTWLPNSNYERGEGPDFEVTDVLNSTPQKISMTIYIPIR

60

120

180

240

297

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Nucleotide sequence

1

61

121

181

241

301

361

421

481

541

601

661

721

781

841

ATGAGCGAGGGAGCTGGATCAATCTTACGAATGGAACATTACACCCGAATCCAATATGCG

ATTACCTTTATAGAAGAACAGCTGCAGGAAGCCCTTAGCTTGGAGGCGATTGCAATCCGG

GCGGGATTTTCGCTGTACCATTTTCAAAGGCTATTCCATGCCATTACGGGCTTTACGGTG

CAGGAATACATTCGGAAGAGAAGGTTAAGCAGGGCTGCCGAAGAGCTGCGGGTTACCCGC

CACACGGTGCTTGATATCTCGGTGTCTTACCAATACGGCTCGCAGGAGGCGTTTACCCGT

GCCTTTGCCGGTTATTTCGGCATGGCTCCGGCACAGTACAGGAAGCATCAGCCGCTGCTT

GCCTTGCGGCTCCCCATTGATCTCGTCGCATTAACGGCTAATATCCGAGGAGGATTAACG

ATGTACAAACCGGACATCATTGAACGGCCAGCGACTCGTATTATCGGTTATAACTACCCG

ACCAATCTGAACAACGAGCGGTATTTCGAGGAGATTCCGGGATTCTATGCGCACTTTGGC

AATCATGAATACTTTATGCGCATCCCTAACAAAGCGCGGCCGGCTTTTGCTTACGGCATC

CCCCATGGTTACGGCGAGGACGGTGCTTTTTCGTTCCTTATAGGCGAGGAGGTCACTTCA

TTTGCGGAGGTAGAGGAGGGCTTCGCCTGCCTTGAGCTTCCTTCCGGCAAATACGCGGCT

TTCCGCAACGGAACTATGCCCGAAATTGGACAAAACGCATGGAAATACATCTATGGAACC

TGGCTGCCTAACAGCAATTATGAGCGGGGAGAGGGACCGGACTTTGAAGTGACGGATGTT

CTGAACTCCACGCCGCAGAAAATCAGCATGACCATTTATATCCCGATTCGCTAA

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894

Domain architecture

Amino acid scale

List domains

Source Domain / Region Position Length Score E-value Overlap
Pfam HTH_AraC 79 .. 115 37 24.8 1e-05 -
Pfam AraC_E_bind 142 .. 297 156 104.5 3.6e-30 -

Click to view sequence

Genome neighborhood

Neighboring DNA

Source complete genome
Relative to Pjdr2_0638 (741524 .. 742417)
Direction
bp

Additional cross-references

Source Identifiers
GI 169006654, 169186685
UniProt B1DAB5
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