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- Rhodopseudomonas palustris HaA2
Genome summary
| Organism | Rhodopseudomonas palustris HaA2 |
|---|---|
| Taxonomy | Bacteria, Proteobacteria, Alphaproteobacteria, Rhizobiales, Bradyrhizobiaceae, Rhodopseudomonas |
| Size | 5.3 Mbp (5,331,656 bp) |
| Status | Complete |
| Replicons | 1 |
| Genes | 4,772 |
| Proteins | 4,683 |
| GC content | 66.0% |
| Gram stain | - |
| Shape | Rod |
| Arrangement | Singles |
| Motile | Yes |
| Habitat | Multiple |
| Oxygen requirement | Facultative |
| Salinity | |
| Temperature range | Mesophilic |
| Pathogenic | |
| Disease |
Genomic distribution of signal transduction proteins by replicon
Major modes
| Two-component | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Accession | Replicon | Size (Mbp) | One-component | HK | HHK | RR | HRR | Other | Chemotaxis * | ECF | Other | Total |
| NC_007778 | complete genome | 5.33 | 202 | 39 | 17 | 56 | 3 | 2 | 35 | 19 | 7 | 380 |
* Note: Chemotaxis is a specialized form of two-component systems (details)
Chemotaxis
| Accession | Replicon | Size (Mbp) | MCP | CheW | CheA | CheR | CheB | CheCX | CheV | CheD | CheZ | Other | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_007778 | complete genome | 5.33 | 28 | 1 | 1 | 3 | 1 | 1 | 35 |
Neighboring two-component genes
| Amount | Colocated with non 2CG | |
|---|---|---|
| Classical | 14 | 7 |
| Hybrid | 3 | 2 |
| Complex | 9 | 3 |
| Orphan | 56 | 38 |
| Total | 82 | 50 |
