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Genome summary

Organism Vibrio parahaemolyticus O1:Kuk str. FDA_R31
Taxonomy Bacteria, Proteobacteria, Gammaproteobacteria, Vibrionales, Vibrionaceae, Vibrio
Size 39.3 Mbp (39,300,949 bp)
Status Complete
Replicons 19
Genes 39,184
Proteins 37,840
GC content 39.6%

Signal Transduction Profile*

0 Transmitter domain(s) 0 Receiver domain(s) 0 Cofactor binding domain(s) 0 Enzymatic domain(s) 0 Protein-protein interaction domain(s) 0 Small-molecule binding domain(s) 0 Unknown domain(s) 0 Adenylate cyclase domain(s) 0 Di-guanylate cyclase domain(s) 0 DNA-binding domain(s) 0 Hydrolase domain(s) 0 Other domain(s) 0 Phosphatase domain(s) 0 Protein kinase domain(s) 0 RNA-binding domain(s) 0 Chemotaxis domain(s) 0 ECF domain(s)

* Note: Chart based on domain counts (details)

Genomic distribution of signal transduction proteins by replicon

Major modes

Two-component
Accession Replicon Size (Mbp) One-component HK HHK RR HRR Other Chemotaxis * ECF Other Total
Total 39.30 2624 204 34 249 2 8 149 20 31 3321
NC_021847 Vibrio parahaemolyticus O1:Kuk str. FDA_R31 chromosome I 3.36 151 17 9 27 1 3 22 4 4 238
NC_021848 Vibrio parahaemolyticus O1:K33 str. CDC_K4557 chromosome I 3.33 154 15 9 27 1 3 21 4 4 238
NC_021826 Listeria monocytogenes strain N1-011A, complete genome 3.09 217 14   15     6 1 2 255
NC_021838 Listeria monocytogenes strain R2-502, complete genome 3.03 216 15   15     6 1 2 255
NC_021823 Listeria monocytogenes strain C1-387, complete genome 2.99 209 16   16     6 2 2 251
NC_021825 Listeria monocytogenes strain J2-1091, complete genome 2.98 218 15   15     6 1 2 257
NC_021837 Listeria monocytogenes strain J2-031, complete genome 2.96 212 14   16     6 1 2 251
NC_021839 Listeria monocytogenes strain J1776, complete genome 2.95 215 15   15     6 1 2 254
NC_021827 Listeria monocytogenes strain J1817, complete genome 2.95 214 15   15     6 1 2 253
NC_021840 Listeria monocytogenes strain J1926, complete genome 2.95 215 15   15     6 1 2 254
NC_021824 Listeria monocytogenes strain J2-064, complete genome 2.94 208 15   15     6 1 2 247
NC_021821 Vibrio parahaemolyticus O1:Kuk str. FDA_R31 chromosome II 1.86 162 14 8 22   1 19 1 1 228
NC_021822 Vibrio parahaemolyticus O1:K33 str. CDC_K4557 chromosome II 1.81 162 15 8 23   1 19 1 1 230
NC_021834 Campylobacter jejuni 32488, complete sequence 1.70 21 6   10     14   3 54
NC_022045 Listeria monocytogenes strain N1-011A plasmid 0.15 16                 16
NC_021828 Listeria monocytogenes strain R2-502 plasmid 0.06 7                 7
NC_022046 Listeria monocytogenes strain J1776 plasmid 0.06 9 1   1           11
NC_022047 Listeria monocytogenes strain J1817 plasmid 0.06 9 1   1           11
NC_022051 Listeria monocytogenes strain J1926 plasmid 0.06 9 1   1           11

* Note: Chemotaxis is a specialized form of two-component systems (details)

Chemotaxis

Accession Replicon Size (Mbp) MCP CheW CheA CheR CheB CheCX CheV CheD CheZ Other Total
Total 39.30 88 5 12 12 3   18   2 9 149
NC_021847 Vibrio parahaemolyticus O1:Kuk str. FDA_R31 chromosome I 3.36 14 2 1 1 1   2   1   22
NC_021848 Vibrio parahaemolyticus O1:K33 str. CDC_K4557 chromosome I 3.33 13 2 1 1 1   2   1   21
NC_021826 Listeria monocytogenes strain N1-011A, complete genome 3.09 2   1 1     1     1 6
NC_021838 Listeria monocytogenes strain R2-502, complete genome 3.03 2   1 1     1     1 6
NC_021823 Listeria monocytogenes strain C1-387, complete genome 2.99 2   1 1     1     1 6
NC_021825 Listeria monocytogenes strain J2-1091, complete genome 2.98 2   1 1     1     1 6
NC_021837 Listeria monocytogenes strain J2-031, complete genome 2.96 2   1 1     1     1 6
NC_021839 Listeria monocytogenes strain J1776, complete genome 2.95 2   1 1     1     1 6
NC_021827 Listeria monocytogenes strain J1817, complete genome 2.95 2   1 1     1     1 6
NC_021840 Listeria monocytogenes strain J1926, complete genome 2.95 2   1 1     1     1 6
NC_021824 Listeria monocytogenes strain J2-064, complete genome 2.94 2   1 1     1     1 6
NC_021821 Vibrio parahaemolyticus O1:Kuk str. FDA_R31 chromosome II 1.86 17           2       19
NC_021822 Vibrio parahaemolyticus O1:K33 str. CDC_K4557 chromosome II 1.81 17           2       19
NC_021834 Campylobacter jejuni 32488, complete sequence 1.70 9 1 1 1 1   1       14
NC_022045 Listeria monocytogenes strain N1-011A plasmid 0.15                      
NC_021828 Listeria monocytogenes strain R2-502 plasmid 0.06                      
NC_022046 Listeria monocytogenes strain J1776 plasmid 0.06                      
NC_022047 Listeria monocytogenes strain J1817 plasmid 0.06                      
NC_022051 Listeria monocytogenes strain J1926 plasmid 0.06                      

Neighboring two-component genes

Colocated with non 2CG Isolated Total
Classical 150 25 175
Hybrid
Complex 12 2 14
Orphan 96 19 115
Total 258 46 304
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