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- Acidovorax sp. JS42
Genome summary
| Organism | Acidovorax sp. JS42 |
|---|---|
| Taxonomy | Bacteria, Proteobacteria, Betaproteobacteria, Burkholderiales, Comamonadaceae, Acidovorax |
| Size | 4.6 Mbp (4,585,154 bp) |
| Status | Complete |
| Replicons | 3 |
| Genes | 4,383 |
| Proteins | 4,155 |
| GC content | 66.1% |
| Gram stain | - |
| Shape | Rod |
| Arrangement | |
| Motile | Yes |
| Habitat | Terrestrial |
| Oxygen requirement | Aerobic |
| Salinity | |
| Temperature range | Mesophilic |
| Pathogenic | |
| Disease |
Genomic distribution of signal transduction proteins by replicon
Major modes
| Two-component | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Accession | Replicon | Size (Mbp) | One-component | HK | HHK | RR | HRR | Other | Chemotaxis * | ECF | Other | Total |
| Total | 4.59 | 182 | 24 | 4 | 36 | 2 | 30 | 14 | 292 | |||
| NC_008782 | complete genome | 4.45 | 181 | 23 | 4 | 35 | 2 | 30 | 13 | 288 | ||
| NC_008765 | plasmid pAOVO01 | 0.07 | 1 | 1 | 1 | 3 | ||||||
| NC_008766 | plasmid pAOVO02 | 0.06 | 1 | 1 | ||||||||
* Note: Chemotaxis is a specialized form of two-component systems (details)
Chemotaxis
| Accession | Replicon | Size (Mbp) | MCP | CheW | CheA | CheR | CheB | CheCX | CheV | CheD | CheZ | Other | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Total | 4.59 | 19 | 3 | 2 | 2 | 2 | 1 | 1 | 30 | ||||
| NC_008782 | complete genome | 4.45 | 19 | 3 | 2 | 2 | 2 | 1 | 1 | 30 | |||
| NC_008765 | plasmid pAOVO01 | 0.07 | |||||||||||
| NC_008766 | plasmid pAOVO02 | 0.06 |
Neighboring two-component genes
| Amount | Colocated with non 2CG | |
|---|---|---|
| Classical | 20 | 16 |
| Hybrid | 1 | 1 |
| Complex | 3 | 2 |
| Orphan | 18 | 11 |
| Total | 42 | 30 |
