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Genome summary

Organism Plesiocystis pacifica SIR-1
Taxonomy Bacteria, Proteobacteria, Deltaproteobacteria, Myxococcales, Nannocystineae, Nannocystaceae, Plesiocystis
Size 10.6 Mbp (10,587,646 bp)
Status Incomplete, draft version 1
Scaffolds 237
Genes 8,526
Proteins 8,450
GC content 70.7%

Signal Transduction Profile*

166 Transmitter domain(s) 96 Receiver domain(s) 1 Cofactor binding domain(s) 0 Enzymatic domain(s) 13 Protein-protein interaction domain(s) 183 Small-molecule binding domain(s) 2 Unknown domain(s) 0 Adenylate cyclase domain(s) 12 Di-guanylate cyclase domain(s) 513 DNA-binding domain(s) 6 Hydrolase domain(s) 9 Other domain(s) 1 Phosphatase domain(s) 283 Protein kinase domain(s) 1 RNA-binding domain(s) 10 Chemotaxis domain(s) 118 ECF domain(s)

* Note: Chart based on domain counts (details)

Genomic distribution of signal transduction proteins by scaffold

Major modes

Two-component
Accession Scaffold Size (Mbp) One-component HK HHK RR HRR Other Chemotaxis * ECF Other Total
Total 10.59 504 65 24 64 3 1 7 118 29 815
NZ_ABCS01000001 1103186006202 0.32 19 1 1         1 1 23
NZ_ABCS01000002 1103186006270 0.23 19 2 1 1       1   24
NZ_ABCS01000003 1103186006335 0.21 15 3 1 1       5   25
NZ_ABCS01000004 1103186006336 0.18 6 3 1 1       1 3 15
NZ_ABCS01000005 1103186006297 0.18 6 2   1       2   11
NZ_ABCS01000006 1103186006281 0.18 2     1       2   5
NZ_ABCS01000007 1103186006290 0.17 5 2   1       3 1 12
NZ_ABCS01000008 1103186006229 0.17 8 1           1   10
NZ_ABCS01000009 1103186006325 0.16 13 1 1         4   19
NZ_ABCS01000010 1103186006341 0.15 7 2   3 1         13
NZ_ABCS01000011 1103186006224 0.15 5                 5
NZ_ABCS01000012 1103186006324 0.15 3             1   4
NZ_ABCS01000013 1103186006323 0.15 5   1         1   7
NZ_ABCS01000014 1103186006267 0.15 3 2   1       2 1 9
NZ_ABCS01000015 1103186006272 0.15 6 3   2   1   1 1 14
NZ_ABCS01000016 1103186006307 0.14 4 2 1             7
NZ_ABCS01000017 1103186006248 0.14 3 2   1       1   7
NZ_ABCS01000018 1103186006269 0.14 14             4   18
NZ_ABCS01000019 1103186006320 0.13 6     1       2   9
NZ_ABCS01000020 1103186006195 0.13 2 2 1         2 2 9
Browse major mode distribution for all 237 contigs ... ... ... ... ... ... ... ... ... ... ...

* Note: Chemotaxis is a specialized form of two-component systems (details)

Chemotaxis

Accession Scaffold Size (Mbp) MCP CheW CheA CheR CheB CheCX CheV CheD CheZ Other Total
Total 10.59 2 2 1 1 1           7
NZ_ABCS01000001 1103186006202 0.32                      
NZ_ABCS01000002 1103186006270 0.23                      
NZ_ABCS01000003 1103186006335 0.21                      
NZ_ABCS01000004 1103186006336 0.18                      
NZ_ABCS01000005 1103186006297 0.18                      
NZ_ABCS01000006 1103186006281 0.18                      
NZ_ABCS01000007 1103186006290 0.17                      
NZ_ABCS01000008 1103186006229 0.17                      
NZ_ABCS01000009 1103186006325 0.16                      
NZ_ABCS01000010 1103186006341 0.15                      
NZ_ABCS01000011 1103186006224 0.15                      
NZ_ABCS01000012 1103186006324 0.15                      
NZ_ABCS01000013 1103186006323 0.15                      
NZ_ABCS01000014 1103186006267 0.15                      
NZ_ABCS01000015 1103186006272 0.15                      
NZ_ABCS01000016 1103186006307 0.14                      
NZ_ABCS01000017 1103186006248 0.14                      
NZ_ABCS01000018 1103186006269 0.14                      
NZ_ABCS01000019 1103186006320 0.13                      
NZ_ABCS01000020 1103186006195 0.13                      
Browse chemotaxis distribution for all 237 contigs ... ... ... ... ... ... ... ... ... ... ...

Neighboring two-component genes

Colocated with non 2CG Isolated Total
Classical
Hybrid
Complex
Orphan
Total      
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