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Genome summary

Organism Desulfovibrio hydrothermalis AM13 = DSM 14728
Taxonomy Bacteria, Proteobacteria, Deltaproteobacteria, Desulfovibrionales, Desulfovibrionaceae, Desulfovibrio
Size 7.4 Mbp (7,416,724 bp)
Status Complete
Replicons 4
Genes 7,306
Proteins 7,096
GC content 45.2%

Signal Transduction Profile*

146 Transmitter domain(s) 106 Receiver domain(s) 2 Cofactor binding domain(s) 3 Enzymatic domain(s) 2 Protein-protein interaction domain(s) 156 Small-molecule binding domain(s) 2 Unknown domain(s) 1 Adenylate cyclase domain(s) 38 Di-guanylate cyclase domain(s) 107 DNA-binding domain(s) 20 Hydrolase domain(s) 3 Other domain(s) 7 Phosphatase domain(s) 1 Protein kinase domain(s) 1 RNA-binding domain(s) 71 Chemotaxis domain(s) 0 ECF domain(s)

* Note: Chart based on domain counts (details)

Genomic distribution of signal transduction proteins by replicon

Major modes

Two-component
Accession Replicon Size (Mbp) One-component HK HHK RR HRR Other Chemotaxis * ECF Other Total
Total 7.42 138 53 12 69 5 13 59   5 354
NC_022579 Desulfovibrio hydrothermalis str. sp nov AM13 chromosome 3.70 138 53 12 69 5 13 59   5 354
NC_020055 Desulfovibrio hydrothermalis AM13 = DSM 14728 chromosome 3.70 138 53 12 69 5 13 59   5 354
NC_022578 Desulfovibrio hydrothermalis str. sp nov AM13 plasmid DESAM_p 0.01                    
NC_019953 Desulfovibrio hydrothermalis AM13 = DSM 14728 plasmid DESAM_p 0.01                    

* Note: Chemotaxis is a specialized form of two-component systems (details)

Chemotaxis

Accession Replicon Size (Mbp) MCP CheW CheA CheR CheB CheCX CheV CheD CheZ Other Total
Total 7.42 30 7 5 6 4   5 1 1   59
NC_022579 Desulfovibrio hydrothermalis str. sp nov AM13 chromosome 3.70 30 7 5 6 4   5 1 1   59
NC_020055 Desulfovibrio hydrothermalis AM13 = DSM 14728 chromosome 3.70 30 7 5 6 4   5 1 1   59
NC_022578 Desulfovibrio hydrothermalis str. sp nov AM13 plasmid DESAM_p 0.01                      
NC_019953 Desulfovibrio hydrothermalis AM13 = DSM 14728 plasmid DESAM_p 0.01                      

Neighboring two-component genes

Colocated with non 2CG Isolated Total
Classical 10 5 15
Hybrid 2   2
Complex 9 1 10
Orphan 66 23 89
Total 87 29 116
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