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- Clostridium thermocellum JW20 (draft v2)
Genome summary
| Organism | Clostridium thermocellum JW20 |
|---|---|
| Taxonomy | Bacteria, Firmicutes, Clostridia, Clostridiales, Clostridiaceae, Clostridium |
| Size | 3.8 Mbp (3,767,546 bp) |
| Status | Incomplete, draft version 2 |
| Contigs | 21 |
| Genes | 3,332 |
| Proteins | 3,076 |
| GC content | 39.1% |
| Gram stain | + |
| Shape | Rod |
| Arrangement | Singles, Pairs, Chains |
| Motile | Yes |
| Habitat | Multiple |
| Oxygen requirement | Anaerobic |
| Salinity | |
| Temperature range | Thermophilic |
| Pathogenic | |
| Disease |
Genomic distribution of signal transduction proteins by contig
Major modes
| Two-component | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Accession | Contig | Size (Mbp) | One-component | HK | HHK | RR | HRR | Other | Chemotaxis * | ECF | Other | Total |
| Total | 3.77 | 110 | 28 | 2 | 31 | 3 | 42 | 1 | 217 | |||
| NZ_ABVG02000001 | ctg299 WGS | 2.28 | 69 | 18 | 2 | 26 | 3 | 25 | 1 | 144 | ||
| NZ_ABVG02000002 | ctg281 WGS | 0.57 | 21 | 2 | 1 | 7 | 31 | |||||
| NZ_ABVG02000003 | ctg300 WGS | 0.20 | 4 | 2 | 2 | 8 | ||||||
| NZ_ABVG02000004 | ctg280 WGS | 0.20 | 6 | 2 | 1 | 9 | ||||||
| NZ_ABVG02000005 | ctg279 WGS | 0.13 | 4 | 1 | 1 | 5 | 11 | |||||
| NZ_ABVG02000006 | ctg278 WGS | 0.13 | 3 | 3 | 1 | 7 | ||||||
| NZ_ABVG02000007 | ctg277 WGS | 0.10 | 1 | 4 | 5 | |||||||
| NZ_ABVG02000008 | ctg275 WGS | 0.03 | 1 | 1 | ||||||||
| NZ_ABVG02000009 | ctg296 WGS | 0.02 | ||||||||||
| NZ_ABVG02000010 | ctg271 WGS | 0.02 | ||||||||||
| Browse major mode distribution for all 21 contigs | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | |
* Note: Chemotaxis is a specialized form of two-component systems (details)
Chemotaxis
| Accession | Contig | Size (Mbp) | MCP | CheW | CheA | CheR | CheB | CheCX | CheV | CheD | CheZ | Other | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Total | 3.77 | 16 | 7 | 4 | 5 | 4 | 4 | 1 | 1 | 42 | |||
| NZ_ABVG02000001 | ctg299 WGS | 2.28 | 9 | 4 | 2 | 3 | 2 | 3 | 1 | 1 | 25 | ||
| NZ_ABVG02000002 | ctg281 WGS | 0.57 | 2 | 1 | 1 | 1 | 1 | 1 | 7 | ||||
| NZ_ABVG02000003 | ctg300 WGS | 0.20 | |||||||||||
| NZ_ABVG02000004 | ctg280 WGS | 0.20 | |||||||||||
| NZ_ABVG02000005 | ctg279 WGS | 0.13 | 1 | 1 | 1 | 1 | 1 | 5 | |||||
| NZ_ABVG02000006 | ctg278 WGS | 0.13 | 1 | 1 | |||||||||
| NZ_ABVG02000007 | ctg277 WGS | 0.10 | 3 | 1 | 4 | ||||||||
| NZ_ABVG02000008 | ctg275 WGS | 0.03 | |||||||||||
| NZ_ABVG02000009 | ctg296 WGS | 0.02 | |||||||||||
| NZ_ABVG02000010 | ctg271 WGS | 0.02 | |||||||||||
| Browse chemotaxis distribution for all 21 contigs | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ||
Neighboring two-component genes
| Amount | Colocated with non 2CG | |
|---|---|---|
| Classical | 16 | 8 |
| Hybrid | 1 | |
| Complex | 2 | 1 |
| Orphan | 25 | 18 |
| Total | 44 | 27 |
