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- Burkholderia mallei PRL-20 (draft v1)
Genome summary
| Organism | Burkholderia mallei PRL-20 |
|---|---|
| Taxonomy | Bacteria, Proteobacteria, Betaproteobacteria, Burkholderiales, Burkholderiaceae, Burkholderia, pseudomallei group |
| Size | 5.7 Mbp (5,669,751 bp) |
| Status | Incomplete, draft version 1 |
| Contigs | 274 |
| Genes | 5,514 |
| Proteins | 5,456 |
| GC content | 68.4% |
| Gram stain | - |
| Shape | Rod |
| Arrangement | Singles |
| Motile | No |
| Habitat | Host-associated |
| Oxygen requirement | Aerobic |
| Salinity | |
| Temperature range | Mesophilic |
| Pathogenic | Yes: Equine |
| Disease | Glanders |
Genomic distribution of signal transduction proteins by contig
Major modes
| Two-component | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Accession | Contig | Size (Mbp) | One-component | HK | HHK | RR | HRR | Other | Chemotaxis * | ECF | Other | Total |
| Total | 5.67 | 263 | 28 | 3 | 45 | 2 | 24 | 14 | 379 | |||
| NZ_AAZP01000001 | gcontig_1105338605075 WGS | 0.18 | 5 | 5 | ||||||||
| NZ_AAZP01000002 | gcontig_1105338598603 WGS | 0.18 | 7 | 7 | ||||||||
| NZ_AAZP01000003 | gcontig_1105338605131 WGS | 0.14 | 6 | 1 | 1 | 1 | 1 | 10 | ||||
| NZ_AAZP01000004 | gcontig_1105338608220 WGS | 0.12 | 1 | 1 | 1 | 3 | ||||||
| NZ_AAZP01000005 | gcontig_1105338598677 WGS | 0.12 | 11 | 1 | 2 | 14 | ||||||
| NZ_AAZP01000006 | gcontig_1105338605045 WGS | 0.12 | 11 | 2 | 13 | |||||||
| NZ_AAZP01000007 | gcontig_1105338598645 WGS | 0.12 | 6 | 3 | 3 | 12 | ||||||
| NZ_AAZP01000008 | gcontig_1105338590735 WGS | 0.11 | 2 | 1 | 1 | 1 | 5 | |||||
| NZ_AAZP01000009 | gcontig_1105338602088 WGS | 0.09 | 6 | 1 | 1 | 1 | 1 | 10 | ||||
| NZ_AAZP01000010 | gcontig_1105338601990 WGS | 0.09 | 3 | 3 | ||||||||
| Browse major mode distribution for all 274 contigs | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | |
* Note: Chemotaxis is a specialized form of two-component systems (details)
Chemotaxis
| Accession | Contig | Size (Mbp) | MCP | CheW | CheA | CheR | CheB | CheCX | CheV | CheD | CheZ | Other | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Total | 5.67 | 15 | 4 | 1 | 2 | 1 | 1 | 24 | |||||
| NZ_AAZP01000001 | gcontig_1105338605075 WGS | 0.18 | |||||||||||
| NZ_AAZP01000002 | gcontig_1105338598603 WGS | 0.18 | |||||||||||
| NZ_AAZP01000003 | gcontig_1105338605131 WGS | 0.14 | 1 | 1 | |||||||||
| NZ_AAZP01000004 | gcontig_1105338608220 WGS | 0.12 | |||||||||||
| NZ_AAZP01000005 | gcontig_1105338598677 WGS | 0.12 | |||||||||||
| NZ_AAZP01000006 | gcontig_1105338605045 WGS | 0.12 | 2 | 2 | |||||||||
| NZ_AAZP01000007 | gcontig_1105338598645 WGS | 0.12 | |||||||||||
| NZ_AAZP01000008 | gcontig_1105338590735 WGS | 0.11 | |||||||||||
| NZ_AAZP01000009 | gcontig_1105338602088 WGS | 0.09 | |||||||||||
| NZ_AAZP01000010 | gcontig_1105338601990 WGS | 0.09 | |||||||||||
| Browse chemotaxis distribution for all 274 contigs | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ||
Neighboring two-component genes
| Amount | Colocated with non 2CG | |
|---|---|---|
| Classical | 24 | 15 |
| Hybrid | 1 | |
| Complex | 1 | |
| Orphan | 25 | 15 |
| Total | 51 | 30 |
