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- Slackia exigua ATCC 700122 (draft v2)
Genome summary
| Organism | Slackia exigua ATCC 700122 |
|---|---|
| Taxonomy | Bacteria, Actinobacteria, Coriobacteridae, Coriobacteriales, Coriobacterineae, Coriobacteriaceae, Slackia |
| Size | 2.1 Mbp (2,094,589 bp) |
| Status | Incomplete, draft version 2 |
| Contigs | 19 |
| Genes | 2,086 |
| Proteins | 2,029 |
| GC content | 62.2% |
| Gram stain | |
| Shape | |
| Arrangement | |
| Motile | |
| Habitat | |
| Oxygen requirement | |
| Salinity | |
| Temperature range | |
| Pathogenic | |
| Disease |
Genomic distribution of signal transduction proteins by contig
Major modes
| Two-component | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Accession | Contig | Size (Mbp) | One-component | HK | HHK | RR | HRR | Other | Chemotaxis * | ECF | Other | Total |
| Total | 2.09 | 118 | 15 | 13 | 146 | |||||||
| NZ_ACUX02000006 | S_exigua-2.0.1_Cont0.5 WGS | 0.52 | 24 | 2 | 2 | 28 | ||||||
| NZ_ACUX02000004 | S_exigua-2.0.1_Cont0.3 WGS | 0.36 | 16 | 2 | 1 | 19 | ||||||
| NZ_ACUX02000019 | S_exigua-2.0.1_Cont1.9 WGS | 0.32 | 20 | 2 | 2 | 24 | ||||||
| NZ_ACUX02000016 | S_exigua-2.0.1_Cont1.6 WGS | 0.24 | 24 | 3 | 3 | 30 | ||||||
| NZ_ACUX02000007 | S_exigua-2.0.1_Cont0.6 WGS | 0.24 | 15 | 5 | 4 | 24 | ||||||
| NZ_ACUX02000005 | S_exigua-2.0.1_Cont0.4 WGS | 0.19 | 8 | 1 | 1 | 10 | ||||||
| NZ_ACUX02000008 | S_exigua-2.0.1_Cont0.7 WGS | 0.07 | 3 | 3 | ||||||||
| NZ_ACUX02000014 | S_exigua-2.0.1_Cont1.4 WGS | 0.04 | 5 | 5 | ||||||||
| NZ_ACUX02000018 | S_exigua-2.0.1_Cont1.8 WGS | 0.03 | ||||||||||
| NZ_ACUX02000017 | S_exigua-2.0.1_Cont1.7 WGS | 0.02 | ||||||||||
| Browse major mode distribution for all 19 contigs | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | |
* Note: Chemotaxis is a specialized form of two-component systems (details)
Chemotaxis
| Accession | Contig | Size (Mbp) | MCP | CheW | CheA | CheR | CheB | CheCX | CheV | CheD | CheZ | Other | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Total | 2.09 | ||||||||||||
| NZ_ACUX02000006 | S_exigua-2.0.1_Cont0.5 WGS | 0.52 | |||||||||||
| NZ_ACUX02000004 | S_exigua-2.0.1_Cont0.3 WGS | 0.36 | |||||||||||
| NZ_ACUX02000019 | S_exigua-2.0.1_Cont1.9 WGS | 0.32 | |||||||||||
| NZ_ACUX02000016 | S_exigua-2.0.1_Cont1.6 WGS | 0.24 | |||||||||||
| NZ_ACUX02000007 | S_exigua-2.0.1_Cont0.6 WGS | 0.24 | |||||||||||
| NZ_ACUX02000005 | S_exigua-2.0.1_Cont0.4 WGS | 0.19 | |||||||||||
| NZ_ACUX02000008 | S_exigua-2.0.1_Cont0.7 WGS | 0.07 | |||||||||||
| NZ_ACUX02000014 | S_exigua-2.0.1_Cont1.4 WGS | 0.04 | |||||||||||
| NZ_ACUX02000018 | S_exigua-2.0.1_Cont1.8 WGS | 0.03 | |||||||||||
| NZ_ACUX02000017 | S_exigua-2.0.1_Cont1.7 WGS | 0.02 | |||||||||||
| Browse chemotaxis distribution for all 19 contigs | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ||
Neighboring two-component genes
| Amount | Colocated with non 2CG | |
|---|---|---|
| Classical | 13 | 9 |
| Hybrid | ||
| Complex | ||
| Orphan | 2 | 2 |
| Total | 15 | 11 |
