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- Ruminococcus flavefaciens FD-1 (draft v1)
Genome summary
| Organism | Ruminococcus flavefaciens FD-1 |
|---|---|
| Taxonomy | Bacteria, Firmicutes, Clostridia, Clostridiales, Ruminococcaceae, Ruminococcus |
| Size | 4.6 Mbp (4,573,608 bp) |
| Status | Incomplete, draft version 1 |
| Contigs | 119 |
| Genes | 4,226 |
| Proteins | 4,162 |
| GC content | 45.0% |
| Gram stain | + |
| Shape | Coccus |
| Arrangement | |
| Motile | No |
| Habitat | Host-associated |
| Oxygen requirement | Anaerobic |
| Salinity | |
| Temperature range | Mesophilic |
| Pathogenic | |
| Disease |
Genomic distribution of signal transduction proteins by contig
Major modes
| Two-component | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Accession | Contig | Size (Mbp) | One-component | HK | HHK | RR | HRR | Other | Chemotaxis * | ECF | Other | Total |
| Total | 4.57 | 220 | 36 | 39 | 2 | 2 | 299 | |||||
| NZ_ACOK01000119 | NZ_ACOK01000119 WGS | 0.20 | 5 | 2 | 1 | 8 | ||||||
| NZ_ACOK01000117 | NZ_ACOK01000117 WGS | 0.18 | 5 | 1 | 6 | |||||||
| NZ_ACOK01000116 | NZ_ACOK01000116 WGS | 0.17 | 10 | 1 | 1 | 12 | ||||||
| NZ_ACOK01000001 | NZ_ACOK01000001 WGS | 0.16 | 5 | 2 | 4 | 11 | ||||||
| NZ_ACOK01000115 | NZ_ACOK01000115 WGS | 0.15 | 4 | 1 | 1 | 6 | ||||||
| NZ_ACOK01000113 | NZ_ACOK01000113 WGS | 0.13 | 7 | 2 | 3 | 12 | ||||||
| NZ_ACOK01000114 | NZ_ACOK01000114 WGS | 0.13 | 6 | 2 | 1 | 9 | ||||||
| NZ_ACOK01000112 | NZ_ACOK01000112 WGS | 0.12 | 11 | 11 | ||||||||
| NZ_ACOK01000094 | NZ_ACOK01000094 WGS | 0.10 | 4 | 4 | ||||||||
| NZ_ACOK01000110 | NZ_ACOK01000110 WGS | 0.10 | 7 | 1 | 1 | 9 | ||||||
| Browse major mode distribution for all 119 contigs | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | |
* Note: Chemotaxis is a specialized form of two-component systems (details)
Chemotaxis
| Accession | Contig | Size (Mbp) | MCP | CheW | CheA | CheR | CheB | CheCX | CheV | CheD | CheZ | Other | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Total | 4.57 | ||||||||||||
| NZ_ACOK01000119 | NZ_ACOK01000119 WGS | 0.20 | |||||||||||
| NZ_ACOK01000117 | NZ_ACOK01000117 WGS | 0.18 | |||||||||||
| NZ_ACOK01000116 | NZ_ACOK01000116 WGS | 0.17 | |||||||||||
| NZ_ACOK01000001 | NZ_ACOK01000001 WGS | 0.16 | |||||||||||
| NZ_ACOK01000115 | NZ_ACOK01000115 WGS | 0.15 | |||||||||||
| NZ_ACOK01000113 | NZ_ACOK01000113 WGS | 0.13 | |||||||||||
| NZ_ACOK01000114 | NZ_ACOK01000114 WGS | 0.13 | |||||||||||
| NZ_ACOK01000112 | NZ_ACOK01000112 WGS | 0.12 | |||||||||||
| NZ_ACOK01000094 | NZ_ACOK01000094 WGS | 0.10 | |||||||||||
| NZ_ACOK01000110 | NZ_ACOK01000110 WGS | 0.10 | |||||||||||
| Browse chemotaxis distribution for all 119 contigs | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ||
Neighboring two-component genes
| Amount | Colocated with non 2CG | |
|---|---|---|
| Classical | 29 | 23 |
| Hybrid | ||
| Complex | 1 | |
| Orphan | 14 | 12 |
| Total | 44 | 35 |
