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- Edwardsiella tarda EIB202
Genome summary
| Organism | Edwardsiella tarda EIB202 |
|---|---|
| Taxonomy | Bacteria, Proteobacteria, Gammaproteobacteria, Enterobacteriales, Enterobacteriaceae, Edwardsiella |
| Size | 3.8 Mbp (3,804,166 bp) |
| Status | Complete |
| Replicons | 2 |
| Genes | 3,716 |
| Proteins | 3,588 |
| GC content | 59.7% |
| Gram stain | - |
| Shape | Rod |
| Arrangement | |
| Motile | Yes |
| Habitat | Multiple |
| Oxygen requirement | Facultative |
| Salinity | |
| Temperature range | Mesophilic |
| Pathogenic | Yes: Fish, Human, Animals |
| Disease | Systemic disease in fish, occassional gastroenteritis, septicemia, and wound infections in human |
Genomic distribution of signal transduction proteins by replicon
Major modes
| Two-component | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Accession | Replicon | Size (Mbp) | One-component | HK | HHK | RR | HRR | Other | Chemotaxis * | ECF | Other | Total |
| Total | 3.80 | 161 | 23 | 6 | 32 | 13 | 8 | 243 | ||||
| NC_013508 | complete genome | 3.76 | 158 | 23 | 6 | 32 | 13 | 8 | 240 | |||
| NC_013509 | plasmid pEIB202 | 0.04 | 3 | 3 | ||||||||
* Note: Chemotaxis is a specialized form of two-component systems (details)
Chemotaxis
| Accession | Replicon | Size (Mbp) | MCP | CheW | CheA | CheR | CheB | CheCX | CheV | CheD | CheZ | Other | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Total | 3.80 | 8 | 1 | 1 | 1 | 1 | 1 | 13 | |||||
| NC_013508 | complete genome | 3.76 | 8 | 1 | 1 | 1 | 1 | 1 | 13 | ||||
| NC_013509 | plasmid pEIB202 | 0.04 |
Neighboring two-component genes
| Amount | Colocated with non 2CG | |
|---|---|---|
| Classical | 22 | 15 |
| Hybrid | 1 | 1 |
| Complex | ||
| Orphan | 15 | 7 |
| Total | 38 | 23 |
