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- Escherichia coli O103:H2 str. 12009
Genome summary
| Organism | Escherichia coli O103:H2 str. 12009 |
|---|---|
| Taxonomy | Bacteria, Proteobacteria, Gammaproteobacteria, Enterobacteriales, Enterobacteriaceae, Escherichia |
| Size | 5.5 Mbp (5,524,860 bp) |
| Status | Complete |
| Replicons | 2 |
| Genes | 5,545 |
| Proteins | 5,121 |
| GC content | 50.6% |
| Gram stain | - |
| Shape | Rod |
| Arrangement | |
| Motile | |
| Habitat | |
| Oxygen requirement | Facultative |
| Salinity | |
| Temperature range | Mesophilic |
| Pathogenic | Yes: Human |
| Disease |
Genomic distribution of signal transduction proteins by replicon
Major modes
| Two-component | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Accession | Replicon | Size (Mbp) | One-component | HK | HHK | RR | HRR | Other | Chemotaxis * | ECF | Other | Total |
| Total | 5.52 | 263 | 24 | 5 | 30 | 9 | 7 | 338 | ||||
| NC_013353 | complete genome | 5.45 | 263 | 24 | 5 | 30 | 9 | 7 | 338 | |||
| NC_013354 | plasmid pO103 | 0.08 | ||||||||||
* Note: Chemotaxis is a specialized form of two-component systems (details)
Chemotaxis
| Accession | Replicon | Size (Mbp) | MCP | CheW | CheA | CheR | CheB | CheCX | CheV | CheD | CheZ | Other | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Total | 5.52 | 4 | 1 | 1 | 1 | 1 | 1 | 9 | |||||
| NC_013353 | complete genome | 5.45 | 4 | 1 | 1 | 1 | 1 | 1 | 9 | ||||
| NC_013354 | plasmid pO103 | 0.08 |
Neighboring two-component genes
| Amount | Colocated with non 2CG | |
|---|---|---|
| Classical | 21 | 10 |
| Hybrid | 1 | |
| Complex | ||
| Orphan | 15 | 9 |
| Total | 37 | 19 |
