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- Clostridium difficile R20291
Genome summary
| Organism | Clostridium difficile R20291 |
|---|---|
| Taxonomy | Bacteria, Firmicutes, Clostridia, Clostridiales, Clostridiaceae, Clostridium |
| Size | 4.2 Mbp (4,191,339 bp) |
| Status | Complete |
| Replicons | 1 |
| Genes | 3,567 |
| Proteins | 3,507 |
| GC content | 28.8% |
| Gram stain | + |
| Shape | Rod |
| Arrangement | Singles, Pairs, Chains |
| Motile | Yes |
| Habitat | Multiple |
| Oxygen requirement | Anaerobic |
| Salinity | |
| Temperature range | Mesophilic |
| Pathogenic | Yes: Human |
| Disease | Antibiotic-associated diarrhea and pseudomembraneous colitis |
Genomic distribution of signal transduction proteins by replicon
Major modes
| Two-component | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Accession | Replicon | Size (Mbp) | One-component | HK | HHK | RR | HRR | Other | Chemotaxis * | ECF | Other | Total |
| NC_013316 | complete genome | 4.19 | 260 | 52 | 55 | 8 | 3 | 378 | ||||
* Note: Chemotaxis is a specialized form of two-component systems (details)
Chemotaxis
| Accession | Replicon | Size (Mbp) | MCP | CheW | CheA | CheR | CheB | CheCX | CheV | CheD | CheZ | Other | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_013316 | complete genome | 4.19 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 8 |
Neighboring two-component genes
| Amount | Colocated with non 2CG | |
|---|---|---|
| Classical | 40 | 27 |
| Hybrid | ||
| Complex | 1 | |
| Orphan | 24 | 16 |
| Total | 65 | 43 |
